I would really want to see to be able to deploy project Apps with the same directory structure as it is created locally in SC. Having several hundred Apps (i.e. I have a project with close to 300 Apps) - all in one folder on the server makes it a nightmare to manage and is very inefficient. I see no reason to not to do this. The best would be to have an option if (when deploying) user wants to preserver directory structure. This is a must!
ARTHUR